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Code Editor : LIF.pm
#------------------------------------------------------------------------------ # File: LIF.pm # # Description: Read LIF (Leica Image File) files # # Revisions: 2021-06-21 - P. Harvey Created #------------------------------------------------------------------------------ package Image::ExifTool::LIF; use strict; use vars qw($VERSION); use Image::ExifTool qw(:DataAccess :Utils); use Image::ExifTool::XMP; $VERSION = '1.00'; %Image::ExifTool::LIF::Main = ( GROUPS => { 0 => 'XML', 1 => 'XML', 2 => 'Image' }, PROCESS_PROC => \&Image::ExifTool::XMP::ProcessXMP, VARS => { NO_ID => 1 }, NOTES => q{ Tags extracted from Leica Image Format (LIF) imaging files. As well as the tags listed below, all available information is extracted from the XML-format metadata in the LIF header. }, TimeStampList => { Groups => { 2 => 'Time' }, ValueConv => q{ my $unixTimeZero = 134774 * 24 * 3600; my @vals = split ' ', $val; foreach (@vals) { $_ = 1e-7 * hex($_); # shift from Jan 1, 1601 to Jan 1, 1970 $_ = Image::ExifTool::ConvertUnixTime($_ - $unixTimeZero); } return \@vals; }, }, ); #------------------------------------------------------------------------------ # Shorten obscenely long LIF tag names # Inputs: Tag name # Returns: Shortened tag name sub ShortenTagNames($) { local $_; $_ = shift; s/DescriptionDimensionsDimensionDescription/Dimensions/; s/DescriptionChannelsChannelDescription/Channel/; s/ShutterListShutter/Shutter/; s/SettingDefinition/Setting/; s/AdditionalZPositionListAdditionalZPosition/AdditionalZPosition/; s/LMSDataContainerHeader//g; s/FilterWheelWheel/FilterWheel/; s/FilterWheelFilter/FilterWheel/; s/DetectorListDetector/Detector/; s/OnlineDyeSeparationOnlineDyeSeparation/OnlineDyeSeparation/; s/AotfListAotf/Aotf/; s/SettingAotfLaserLineSetting/SettingAotfLaser/; s/DataROISetROISet/DataROISet/; s/AdditionalZPosition/AddZPos/; s/FRAPplusBlock_FRAPBlock_FRAP_PrePost_Info/FRAP_/; s/FRAPplusBlock_FRAPBlock_FRAP_(Master)?/FRAP_/; s/LDM_Block_SequentialLDM_Block_Sequential_/LDM_/; s/ATLConfocalSetting/ATLConfocal/; s/LaserArrayLaser/Laser/; s/LDM_Master/LDM_/; s/(List)?ATLConfocal/ATL_/; s/Separation/Sep/; s/BleachPointsElement/BleachPoint/; s/BeamPositionBeamPosition/BeamPosition/; s/DataROISetPossible(ROI)?/DataROISet/; s/RoiElementChildrenElementDataROISingle(Roi)?/Roi/; s/InfoLaserLineSettingArrayLaserLineSetting/LastLineSetting/; s/FilterWheelWheelNameFilterName/FilterWheelFilterName/; s/LUT_ListLut/Lut/; s/ROI_ListRoiRoidata/ROI_/; s/LaserLineSettingArrayLaserLineSetting/LaserLineSetting/; return $_; } #------------------------------------------------------------------------------ # Extract metadata from a LIF image # Inputs: 0) ExifTool object reference, 1) dirInfo reference # Returns: 1 on success, 0 if this wasn't a valid LIF file sub ProcessLIF($$) { my ($et, $dirInfo) = @_; my $raf = $$dirInfo{RAF}; my $buff; # verify this is a valid LIF file return 0 unless $raf->Read($buff, 15) == 15 and $buff =~ /^\x70\0{3}.{4}\x2a.{4}<\0/s; $et->SetFileType(); SetByteOrder('II'); my $size = Get32u(\$buff, 4); # XML chunk size my $len = Get32u(\$buff, 9) * 2; # XML data length $size < $len and $et->Error('Corrupted LIF XML block'), return 1; $size > 100000000 and $et->Error('LIF XML block too large'), return 1; $raf->Seek(-2, 1) and $raf->Read($buff, $len) == $len or $et->Error('Truncated LIF XML block'), return 1; my $tagTablePtr = GetTagTable('Image::ExifTool::LIF::Main'); # convert from UCS2 to UTF8 my $xml = Image::ExifTool::Decode($et, $buff, 'UCS2', 'II', 'UTF8'); my %dirInfo = ( DataPt => \$xml ); $$et{XmpIgnoreProps} = [ 'LMSDataContainerHeader', 'Element', 'Children', 'Data', 'Image', 'Attachment' ]; $$et{ShortenXmpTags} = \&ShortenTagNames; $et->ProcessDirectory(\%dirInfo, $tagTablePtr); return 1; } 1; # end __END__ =head1 NAME Image::ExifTool::LIF - Read LIF meta information =head1 SYNOPSIS This module is used by Image::ExifTool =head1 DESCRIPTION This module contains definitions required by Image::ExifTool to read metadata from Leica Image File (LIF) images. =head1 AUTHOR Copyright 2003-2022, Phil Harvey (philharvey66 at gmail.com) This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. =head1 SEE ALSO L<Image::ExifTool::TagNames/LIF Tags>, L<Image::ExifTool(3pm)|Image::ExifTool> =cut
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